The files on this page contain a variety of information on the layout and annotation for different commercial microarray manufacturers.
The CDF libraries contain CEL definition file data that is required when working with Affymetrix CEL data files. See the data libraries description for more information on how the libraries are used in ArrayAnalyzer.
| Annotation Libraries | |||
| Chip Name | Library Name | Version | Zip File |
| ag | agAnnoData | 1.10.0 | agAnnoData.zip |
| agahomology | agahomologyAnnoData | 1.10.0 | agahomologyAnnoData.zip |
| ath1121501 | ath1121501AnnoData | 1.10.0 | ath1121501AnnoData.zip |
| athhomology | athhomologyAnnoData | 1.10.0 | athhomologyAnnoData.zip |
| btahomology | btahomologyAnnoData | 1.8.4 | btahomologyAnnoData.zip |
| canine2 | canine2AnnoData | 1.10.0 | canine2AnnoData.zip |
| celhomology | celhomologyAnnoData | 1.10.0 | celhomologyAnnoData.zip |
| cfahomology | cfahomologyAnnoData | 1.10.0 | cfahomologyAnnoData.zip |
| cinhomology | cinhomologyAnnoData | 1.8.4 | cinhomologyAnnoData.zip |
| cMAP | cMAPAnnoData | 1.10.0 | cMAPAnnoData.zip |
| dmehomology | dmehomologyAnnoData | 1.10.0 | dmehomologyAnnoData.zip |
| drehomology | drehomologyAnnoData | 1.8.4 | drehomologyAnnoData.zip |
| drosgenome1 | drosgenome1AnnoData | 1.10.0 | drosgenome1AnnoData.zip |
| drosophila2 | drosophila2AnnoData | 1.10.0 | drosophila2AnnoData.zip |
| egohomology | egohomologyAnnoData | 1.10.0 | egohomologyAnnoData.zip |
| ggahomology | ggahomologyAnnoData | 1.10.0 | ggahomologyAnnoData.zip |
| gmahomology | gmahomologyAnnoData | 1.8.4 | gmahomologyAnnoData.zip |
| GO | GOAnnoData | 1.10.0 | GOAnnoData.zip |
| hcg110 | hcg110AnnoData | 1.10.0 | hcg110AnnoData.zip |
| hgfocus | hgfocusAnnoData | 1.10.1 | hgfocusAnnoData.zip |
| hgu133a2 | hgu133a2AnnoData | 1.10.1 | hgu133a2AnnoData.zip |
| hgu133a | hgu133aAnnoData | 1.10.0 | hgu133aAnnoData.zip |
| hgu133b | hgu133bAnnoData | 1.10.0 | hgu133bAnnoData.zip |
| hgu133plus2 | hgu133plus2AnnoData | 1.10.1 | hgu133plus2AnnoData.zip |
| hgu95a | hgu95aAnnoData | 1.10.0 | hgu95aAnnoData.zip |
| hgu95av2 | hgu95av2AnnoData | 1.10.0 | hgu95av2AnnoData.zip |
| hgu95b | hgu95bAnnoData | 1.10.1 | hgu95bAnnoData.zip |
| hgu95c | hgu95cAnnoData | 1.10.1 | hgu95cAnnoData.zip |
| hgu95d | hgu95dAnnoData | 1.10.1 | hgu95dAnnoData.zip |
| hgu95e | hgu95eAnnoData | 1.10.1 | hgu95eAnnoData.zip |
| hguatlas13k | hguatlas13kAnnoData | 1.10.1 | hguatlas13kAnnoData.zip |
| hgubeta7 | hgubeta7AnnoData | 1.10.1 | hgubeta7AnnoData.zip |
| hguDKFZ31 | hguDKFZ31AnnoData | 1.10.1 | hguDKFZ31AnnoData.zip |
| hgug4100a | hgug4100aAnnoData | 1.10.1 | hgug4100aAnnoData.zip |
| hgug4101a | hgug4101aAnnoData | 1.10.1 | hgug4101aAnnoData.zip |
| hgug4110b | hgug4110bAnnoData | 1.10.1 | hgug4110bAnnoData.zip |
| hgug4111a | hgug4111aAnnoData | 1.10.1 | hgug4111aAnnoData.zip |
| hgug4112a | hgug4112aAnnoData | 1.10.1 | hgug4112aAnnoData.zip |
| hsahomology | hsahomologyAnnoData | 1.10.0 | hsahomologyAnnoData.zip |
| hu35ksuba | hu35ksubaAnnoData | 1.10.1 | hu35ksubaAnnoData.zip |
| hu35ksubb | hu35ksubbAnnoData | 1.10.1 | hu35ksubbAnnoData.zip |
| hu35ksubc | hu35ksubcAnnoData | 1.10.1 | hu35ksubcAnnoData.zip |
| hu35ksubd | hu35ksubdAnnoData | 1.10.1 | hu35ksubdAnnoData.zip |
| hu6800 | hu6800AnnoData | 1.10.1 | hu6800AnnoData.zip |
| humanCHRLOC | humanCHRLOCAnnoData | 1.10.0 | humanCHRLOCAnnoData.zip |
| humanLLMappings | humanLLMappingsAnnoData | 1.10.0 | humanLLMappingsAnnoData.zip |
| hvuhomology | hvuhomologyAnnoData | 1.8.4 | hvuhomologyAnnoData.zip |
| indac | indacAnnoData | 1.10.0 | indacAnnoData.zip |
| KEGG | KEGGAnnoData | 1.10.0 | KEGGAnnoData.zip |
| klahomology | klahomologyAnnoData | 1.10.0 | klahomologyAnnoData.zip |
| mgrhomology | mgrhomologyAnnoData | 1.10.0 | mgrhomologyAnnoData.zip |
| mgu74a | mgu74aAnnoData | 1.10.1 | mgu74aAnnoData.zip |
| mgu74av2 | mgu74av2AnnoData | 1.10.0 | mgu74av2AnnoData.zip |
| mgu74b | mgu74bAnnoData | 1.10.1 | mgu74bAnnoData.zip |
| mgu74bv2 | mgu74bv2AnnoData | 1.10.1 | mgu74bv2AnnoData.zip |
| mgu74c | mgu74cAnnoData | 1.10.1 | mgu74cAnnoData.zip |
| mgu74cv2 | mgu74cv2AnnoData | 1.10.1 | mgu74cv2AnnoData.zip |
| mmuhomology | mmuhomologyAnnoData | 1.10.0 | mmuhomologyAnnoData.zip |
| moe430a | moe430aAnnoData | 1.10.0 | moe430aAnnoData.zip |
| moe430b | moe430bAnnoData | 1.10.0 | moe430bAnnoData.zip |
| mouse4302 | mouse4302AnnoData | 1.10.1 | mouse4302AnnoData.zip |
| mouse430a2 | mouse430a2AnnoData | 1.10.1 | mouse430a2AnnoData.zip |
| mouseCHRLOC | mouseCHRLOCAnnoData | 1.10.0 | mouseCHRLOCAnnoData.zip |
| mouseLLMappings | mouseLLMappingsAnnoData | 1.10.0 | mouseLLMappingsAnnoData.zip |
| ncrhomology | ncrhomologyAnnoData | 1.10.0 | ncrhomologyAnnoData.zip |
| omyhomology | omyhomologyAnnoData | 1.8.4 | omyhomologyAnnoData.zip |
| osahomology | osahomologyAnnoData | 1.10.0 | osahomologyAnnoData.zip |
| pfahomology | pfahomologyAnnoData | 1.10.0 | pfahomologyAnnoData.zip |
| ptrhomology | ptrhomologyAnnoData | 1.10.0 | ptrhomologyAnnoData.zip |
| rae230a | rae230aAnnoData | 1.10.0 | rae230aAnnoData.zip |
| rae230b | rae230bAnnoData | 1.10.0 | rae230bAnnoData.zip |
| rat2302 | rat2302AnnoData | 1.10.1 | rat2302AnnoData.zip |
| ratCHRLOC | ratCHRLOCAnnoData | 1.10.0 | ratCHRLOCAnnoData.zip |
| ratLLMappings | ratLLMappingsAnnoData | 1.10.0 | ratLLMappingsAnnoData.zip |
| rgu34a | rgu34aAnnoData | 1.10.0 | rgu34aAnnoData.zip |
| rgu34b | rgu34bAnnoData | 1.10.1 | rgu34bAnnoData.zip |
| rgu34c | rgu34cAnnoData | 1.10.1 | rgu34cAnnoData.zip |
| rnohomology | rnohomologyAnnoData | 1.10.0 | rnohomologyAnnoData.zip |
| rnu34 | rnu34AnnoData | 1.10.0 | rnu34AnnoData.zip |
| rtu34 | rtu34AnnoData | 1.10.0 | rtu34AnnoData.zip |
| scehomology | scehomologyAnnoData | 1.10.0 | scehomologyAnnoData.zip |
| spohomology | spohomologyAnnoData | 1.10.0 | spohomologyAnnoData.zip |
| sschomology | sschomologyAnnoData | 1.8.4 | sschomologyAnnoData.zip |
| taehomology | taehomologyAnnoData | 1.8.4 | taehomologyAnnoData.zip |
| u133x3p | u133x3pAnnoData | 1.10.1 | u133x3pAnnoData.zip |
| vvihomology | vvihomologyAnnoData | 1.8.4 | vvihomologyAnnoData.zip |
| xenopuslaevis | xenopuslaevisAnnoData | 1.10.0 | xenopuslaevisAnnoData.zip |
| xlahomology | xlahomologyAnnoData | 1.8.4 | xlahomologyAnnoData.zip |
| xtrhomology | xtrhomologyAnnoData | 1.8.4 | xtrhomologyAnnoData.zip |
| YEAST | YEASTAnnoData | 1.10.0 | YEASTAnnoData.zip |
|
yeast2
|
yeast2AnnoData
|
1.10.0
|
|
|
ygs98
|
ygs98AnnoData
|
1.10.0
|
|
|
zebrafish
|
zebrafishAnnoData
|
1.10.1
|
|
|
zmahomology
|
zmahomologyAnnoData
|
1.8.4
|
|
| CDF Libraries | |||
| Chip Name | Library Name | Version | Zip File |
| ag | agcdf | 1.10.0 | agcdf.zip |
| ath1121501 | ath1121501cdf | 1.10.0 | ath1121501cdf.zip |
| barley1 | barley1cdf | 1.10.0 | barley1cdf.zip |
| bovine | bovinecdf | 1.10.0 | bovinecdf.zip |
| bsubtilis | bsubtiliscdf | 1.10.0 | bsubtiliscdf.zip |
| canine | caninecdf | 1.10.0 | caninecdf.zip |
| canine2 | canine2cdf | 1.10.0 | canine2cdf.zip |
| celegans | celeganscdf | 1.10.0 | celeganscdf.zip |
| chicken | chickencdf | 1.10.0 | chickencdf.zip |
| cyp450 | cyp450cdf | 1.10.0 | cyp450cdf.zip |
| drosgenome1 | drosgenome1cdf | 1.10.0 | drosgenome1cdf.zip |
| drosophila2 | drosophila2cdf | 1.10.0 | drosophila2cdf.zip |
| ecoli | ecolicdf | 1.10.0 | ecolicdf.zip |
| ecoli2 | ecoli2cdf | 1.10.0 | ecoli2cdf.zip |
| ecoliasv2 | ecoliasv2cdf | 1.10.0 | ecoliasv2cdf.zip |
| genflex | genflexcdf | 1.5.1 | genflexcdf.zip |
| gp53 | gp53cdf | 1.10.0 | gp53cdf.zip |
| hcg110 | hcg110cdf | 1.10.0 | hcg110cdf.zip |
| hgfocus | hgfocuscdf | 1.10.0 | hgfocuscdf.zip |
| hgu133a | hgu133acdf | 1.10.0 | hgu133acdf.zip |
| hgu133a2 | hgu133a2cdf | 1.10.0 | hgu133a2cdf.zip |
| hgu133atag | hgu133atagcdf | 1.10.0 | hgu133atagcdf.zip |
| hgu133b | hgu133bcdf | 1.10.0 | hgu133bcdf.zip |
| hgu133plus2 | hgu133plus2cdf | 1.10.0 | hgu133plus2cdf.zip |
| hgu95a | hgu95acdf | 1.10.0 | hgu95acdf.zip |
| hgu95av2 | hgu95av2cdf | 1.10.0 | hgu95av2cdf.zip |
| hgu95b | hgu95bcdf | 1.10.0 | hgu95bcdf.zip |
| hgu95c | hgu95ccdf | 1.10.0 | hgu95ccdf.zip |
| hgu95d | hgu95dcdf | 1.10.0 | hgu95dcdf.zip |
| hgu95e | hgu95ecdf | 1.10.0 | hgu95ecdf.zip |
| hivprtplus2 | hivprtplus2cdf | 1.10.0 | hivprtplus2cdf.zip |
| hu35ksuba | hu35ksubacdf | 1.10.0 | hu35ksubacdf.zip |
| hu35ksubb | hu35ksubbcdf | 1.10.0 | hu35ksubbcdf.zip |
| hu35ksubc | hu35ksubccdf | 1.10.0 | hu35ksubccdf.zip |
| hu35ksubd | hu35ksubdcdf | 1.10.0 | hu35ksubdcdf.zip |
| hu6800 | hu6800cdf | 1.10.0 | hu6800cdf.zip |
| hu6800suba | hu6800subacdf | 1.10.0 | hu6800subacdf.zip |
| hu6800subb | hu6800subbcdf | 1.10.0 | hu6800subbcdf.zip |
| hu6800subc | hu6800subccdf | 1.10.0 | hu6800subccdf.zip |
| hu6800subd | hu6800subdcdf | 1.10.0 | hu6800subdcdf.zip |
| husnp | husnpcdf | 1.5.1 | husnpcdf.zip |
| maize | maizecdf | 1.10.0 | maizecdf.zip |
| mapping10kxba131 | mapping10kxba131cdf | 1.5.1 | mapping10kxba131cdf.zip |
| medicago | medicagocdf | 1.10.0 | medicagocdf.zip |
| mgu74a | mgu74acdf | 1.10.0 | mgu74acdf.zip |
| mgu74av2 | mgu74av2cdf | 1.10.0 | mgu74av2cdf.zip |
| mgu74b | mgu74bcdf | 1.10.0 | mgu74bcdf.zip |
| mgu74bv2 | mgu74bv2cdf | 1.10.0 | mgu74bv2cdf.zip |
| mgu74c | mgu74ccdf | 1.10.0 | mgu74ccdf.zip |
| mgu74cv2 | mgu74cv2cdf | 1.10.0 | mgu74cv2cdf.zip |
| moe430a | moe430acdf | 1.10.0 | moe430acdf.zip |
| moe430b | moe430bcdf | 1.10.0 | moe430bcdf.zip |
| mouse4302 | mouse4302cdf | 1.10.0 | mouse4302cdf.zip |
| mouse430a2 | mouse430a2cdf | 1.10.0 | mouse430a2cdf.zip |
| mu11ksuba | mu11ksubacdf | 1.10.0 | mu11ksubacdf.zip |
| mu11ksubb | mu11ksubbcdf | 1.10.0 | mu11ksubbcdf.zip |
| mu19ksuba | mu19ksubacdf | 1.10.0 | mu19ksubacdf.zip |
| mu19ksubb | mu19ksubbcdf | 1.10.0 | mu19ksubbcdf.zip |
| mu19ksubc | mu19ksubccdf | 1.10.0 | mu19ksubccdf.zip |
| mu6500suba | mu6500subacdf | 1.10.0 | mu6500subacdf.zip |
| mu6500subb | mu6500subbcdf | 1.10.0 | mu6500subbcdf.zip |
| mu6500subc | mu6500subccdf | 1.10.0 | mu6500subccdf.zip |
| mu6500subd | mu6500subdcdf | 1.10.0 | mu6500subdcdf.zip |
| paeg1a | paeg1acdf | 1.10.0 | paeg1acdf.zip |
| plasmodiumanopheles | plasmodiumanophelescdf | 1.10.0 | plasmodiumanophelescdf.zip |
| porcine | porcinecdf | 1.10.0 | porcinecdf.zip |
| prt440a | prt440acdf | 1.10.0 | prt440acdf.zip |
| prt440s | prt440scdf | 1.10.0 | prt440scdf.zip |
| rae230a | rae230acdf | 1.10.0 | rae230acdf.zip |
| rae230b | rae230bcdf | 1.10.0 | rae230bcdf.zip |
| rat2302 | rat2302cdf | 1.10.0 | rat2302cdf.zip |
| rgu34a | rgu34acdf | 1.10.0 | rgu34acdf.zip |
| rgu34b | rgu34bcdf | 1.10.0 | rgu34bcdf.zip |
| rgu34c | rgu34ccdf | 1.10.0 | rgu34ccdf.zip |
| rhesus | rhesuscdf | 1.10.0 | rhesuscdf.zip |
| rice | ricecdf | 1.10.0 | ricecdf.zip |
| rnu34 | rnu34cdf | 1.10.0 | rnu34cdf.zip |
| rtu34 | rtu34cdf | 1.10.0 | rtu34cdf.zip |
| saureus | saureuscdf | 1.10.0 | saureuscdf.zip |
| soybean | soybeancdf | 1.10.0 | soybeancdf.zip |
| sugarcane | sugarcanecdf | 1.10.0 | sugarcanecdf.zip |
| tag3 | tag3cdf | 1.5.1 | tag3cdf.zip |
| test1 | test1cdf | 1.10.0 | test1cdf.zip |
| test2 | test2cdf | 1.10.0 | test2cdf.zip |
| test3 | test3cdf | 1.10.0 | test3cdf.zip |
| tomato | tomatocdf | 1.10.0 | tomatocdf.zip |
| u133x3p | u133x3pcdf | 1.10.0 | u133x3pcdf.zip |
| vitisvinifera | vitisviniferacdf | 1.10.0 | vitisviniferacdf.zip |
| wheat | wheatcdf | 1.10.0 | wheatcdf.zip |
| xenopuslaevis | xenopuslaeviscdf | 1.10.0 | xenopuslaeviscdf.zip |
| ye6100suba | ye6100subacdf | 1.10.0 | ye6100subacdf.zip |
| ye6100subb | ye6100subbcdf | 1.10.0 | ye6100subbcdf.zip |
| ye6100subc | ye6100subccdf | 1.10.0 | ye6100subccdf.zip |
| ye6100subd | ye6100subdcdf | 1.10.0 | ye6100subdcdf.zip |
| yeast2 | yeast2cdf | 1.10.0 | yeast2cdf.zip |
| ygs98 | ygs98cdf | 1.10.0 | ygs98cdf.zip |
| zebrafish | zebrafishcdf | 1.10.0 | zebrafishcdf.zip |